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Add protobuf as makedepends

Acid Xeon requested to merge (removed):patch-1 into main

Currently build with a vendored one [1], replace with the system one instead.

[1] https://github.com/maelstrom-software/maelstrom/blob/v0.12.0/crates/maelstrom-client-base/build.rs#L5-L23

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